tRNA Gene Summary

Overview
High confidence set 621
tRNAs decoding standard 20 AA 620
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 7
Unexpected anticodons 5
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 409
Secondary filter (low feature scores, possible rep. element) 147
Tertiary filter (excessive isotype copies, possible rep. element) 2

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 70)
Thr AGT
2
Arg TCT
21
Leu CAA
6
Ile TAT
24
Tyr GTA
17
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
17
GGC
 
CGC
12
TGC
10
39
GlyACC
 
GCC
13
CCC
8
TCC
12
33
ProAGG
13
GGG
 
CGG
4
TGG
8
25
ThrAGT
16
GGT
 
CGT
7
TGT
19
42
ValAAC
8
GAC
 
CAC
9
TAC
9
26
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
10
GGA
 
CGA
6
TGA
9
ACT
 
GCT
10
 
 
 
 
35
ArgACG
16
GCG
 
CCG
6
TCG
7
 
 
 
 
CCT
19
TCT
26
74
LeuAAG
15
GAG
 
CAG
16
TAG
6
 
 
 
 
CAA
6
TAA
11
54
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
23
 
 
 
 
23
AsnATT
 
GTT
9
 
 
 
 
9
Lys 
 
 
 
CTT
37
TTT
14
51
AspATC
 
GTC
8
 
 
 
 
8
Glu 
 
 
 
CTC
14
TTC
14
28
HisATG
 
GTG
17
 
 
 
 
17
Gln 
 
 
 
CTG
11
TTG
6
17
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
22
GAT
 
CAT
 
TAT
24
46
iMet/Met 
 
 
 
CAT
19/6
 
 
25
TyrATA
 
GTA
17
 
 
 
 
17
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
39
 
 
 
 
39
Trp 
 
 
 
CCA
12
 
 
12
SelCys 
 
 
 
 
 
TCA
1
1