tRNA Gene Summary

Overview
High confidence set 469
tRNAs decoding standard 20 AA 465
Selenocysteine tRNAs (TCA) 4
Notable atypical predictions  
Anticodon/isotype mismatch 19
Unexpected anticodons 3
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 7387
Secondary filter (low feature scores, possible rep. element) 2313

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 27)
Arg TCT
4
Leu CAA
6
Ile TAT
5
Tyr GTA
12
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
20
GGC
 
CGC
8
TGC
11
39
GlyACC
 
GCC
14
CCC
10
TCC
29
53
ProAGG
8
GGG
 
CGG
4
TGG
6
18
ThrAGT
8
GGT
 
CGT
6
TGT
7
21
ValAAC
13
GAC
 
CAC
10
TAC
9
32
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
13
GGA
 
CGA
4
TGA
5
ACT
 
GCT
15
 
 
 
 
37
ArgACG
9
GCG
 
CCG
4
TCG
7
 
 
 
 
CCT
5
TCT
5
30
LeuAAG
8
GAG
 
CAG
6
TAG
5
 
 
 
 
CAA
6
TAA
5
30
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
12
 
 
 
 
12
AsnATT
 
GTT
22
 
 
 
 
22
Lys 
 
 
 
CTT
18
TTT
13
31
AspATC
 
GTC
10
 
 
 
 
10
Glu 
 
 
 
CTC
5
TTC
6
11
HisATG
 
GTG
10
 
 
 
 
10
Gln 
 
 
 
CTG
11
TTG
4
15
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
12
GAT
 
CAT
 
TAT
5
17
iMet/Met 
 
 
 
CAT
14/13
 
 
27
TyrATA
 
GTA
12
 
 
 
 
12
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
22
 
 
 
 
22
Trp 
 
 
 
CCA
16
 
 
16
SelCys 
 
 
 
 
 
TCA
3
4