tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 10:56:37 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         180
Seqs w/at least 1 hit:  47
Bases read:             35011981 (x2 for both strands)
Bases in tRNAs:         18687
tRNAs predicted:        207
Av. tRNA length:        90
Script CPU time:        4.09 s
Scan CPU time:          162.69 s
Scan speed:             430.4 Kbp/sec

First pass search(es) ended: Tue Aug 22 10:58:05 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     207
Infernal-confirmed tRNAs:     196
Bases scanned by Infernal:  22827
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.43 s
Infernal CPU time:            161.86 s
Scan speed:               141.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 11:01:26 PDT 2017

Overall scan speed: 211508.0 bp/sec