tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 189
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 6
Total tRNAs 196
Intron Summary (tRNAs with introns: 96)
Ala CGC
2
Gly CCC
1
Gly TCC
3
Pro AGG
2
Pro CGG
3
Pro TGG
2
Thr AGT
5
Thr CGT
2
Thr TGT
2
Val AAC
7
Val CAC
3
Val TAC
1
Ser TGA
2
Ser GCT
3
Arg ACG
6
Arg TCG
2
Arg CCT
1
Arg TCT
1
Leu AAG
6
Leu CAG
3
Leu TAG
2
Leu CAA
2
Asn GTT
1
Asp GTC
8
Glu TTC
2
His GTG
7
Gln TTG
4
Ile TAT
1
Met CAT
4
Tyr GTA
4
Supres TTA
1
Cys GCA
3

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 11520

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
8
GGC
 
CGC
2
TGC
4
14
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
12
CCC
1
TCC
3
16
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
2
GGG
 
CGG
3
TGG
2
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
8
GGT
 
CGT
2
TGT
3
13
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
3
TAC
2
12
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
1
GGA
 
CGA
 
TGA
2
ACT
 
GCT
4
 
 
 
 
7
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
16
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
1
TCT
1
22
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
6
GAG
 
CAG
3
TAG
2
 
 
 
 
CAA
2
TAA
 
13
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
7
 
 
 
 
7
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
12
TTT
1
13
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
8
 
 
 
 
8
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
9
TTC
4
13
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
7
 
 
 
 
7
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
6
TTG
4
10
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
5
GAT
 
 
 
TAT
1
6
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
-/9
 
 
0
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
1
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
5
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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