tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 11:24:34 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         24
Seqs w/at least 1 hit:  15
Bases read:             30685460 (x2 for both strands)
Bases in tRNAs:         15181
tRNAs predicted:        185
Av. tRNA length:        82
Script CPU time:        2.97 s
Scan CPU time:          152.79 s
Scan speed:             401.7 Kbp/sec

First pass search(es) ended: Tue Aug 22 11:24:57 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     185
Infernal-confirmed tRNAs:     184
Bases scanned by Infernal:  18881
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.55 s
Infernal CPU time:            126.91 s
Scan speed:               148.8 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 11:27:25 PDT 2017

Overall scan speed: 215927.5 bp/sec