tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 11:35:30 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         48
Seqs w/at least 1 hit:  12
Bases read:             29010044 (x2 for both strands)
Bases in tRNAs:         17070
tRNAs predicted:        203
Av. tRNA length:        84
Script CPU time:        3.04 s
Scan CPU time:          141.45 s
Scan speed:             410.2 Kbp/sec

First pass search(es) ended: Tue Aug 22 11:35:56 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     203
Infernal-confirmed tRNAs:     196
Bases scanned by Infernal:  21130
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.59 s
Infernal CPU time:            133.31 s
Scan speed:               158.5 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 11:38:28 PDT 2017

Overall scan speed: 207667.0 bp/sec