tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 189
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 6
Total tRNAs 196
Intron Summary (tRNAs with introns: 86)
Ala CGC
2
Gly CCC
1
Gly TCC
3
Pro AGG
6
Pro CGG
1
Pro TGG
2
Thr AGT
8
Thr CGT
2
Val AAC
6
Val GAC
2
Val TAC
1
Ser CGA
1
Ser TGA
1
Arg TCG
1
Arg CCT
1
Leu AAG
5
Leu CAG
3
Leu TAG
1
Leu CAA
2
Leu TAA
1
Lys TTT
1
Asp GTC
7
Glu TTC
1
His ATG
1
His GTG
10
Gln TTG
2
Ile TAT
3
Met CAT
4
Tyr GTA
6
Supres TCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 2803

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
7
GGC
 
CGC
2
TGC
3
12
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
11
CCC
1
TCC
3
15
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
6
GGG
 
CGG
1
TGG
2
9
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
8
GGT
 
CGT
2
TGT
3
13
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
6
GAC
2
CAC
2
TAC
2
12
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
8
GGA
 
CGA
1
TGA
1
ACT
 
GCT
3
 
 
 
 
13
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
8
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
1
TCT
3
16
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
5
GAG
 
CAG
3
TAG
1
 
 
 
 
CAA
2
TAA
2
13
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
6
 
 
 
 
6
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
10
TTT
2
12
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
7
 
 
 
 
7
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
8
TTC
4
12
 
 
 
 
GAG
0
GAA
0
0%
HisATG
1
GTG
10
 
 
 
 
11
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
5
TTG
2
7
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
7
GAT
 
 
 
TAT
3
10
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
-/9
 
 
0
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
7
 
 
 
 
7
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
3
 
 
3
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
-