tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 200
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 6
Predicted pseudogenes 10
Total tRNAs 217
Intron Summary (tRNAs with introns: 90)
Ala CGC
2
Gly CCC
1
Gly TCC
3
Pro CGG
2
Pro TGG
2
Thr AGT
6
Thr CGT
1
Thr TGT
2
Val AAC
8
Val CAC
3
Val TAC
1
Ser AGA
3
Ser CGA
3
Ser TGA
1
Ser GCT
4
Arg TCG
1
Arg CCT
1
Leu AAG
6
Leu CAG
3
Asn GTT
1
Lys TTT
1
Asp GTC
8
Glu TTC
1
His ATG
1
His GTG
6
Gln TTG
3
Ile TAT
1
iMet CAT
1
Met CAT
5
Tyr GTA
5
Supres TTA
1
Cys GCA
3

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 13671
Number of Codons: 6897513

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
8
GGC
 
CGC
2
TGC
3
13
GCT
1.87
GCC
1.96
GCG
1.4
GCA
1.74
6.97%
GlyACC
 
GCC
11
CCC
1
TCC
3
15
GGT
1.52
GGC
1.77
GGG
1.17
GGA
1.71
6.17%
ProAGG
 
GGG
 
CGG
2
TGG
2
4
CCT
1.66
CCC
1.69
CCG
1.52
CCA
1.85
6.72%
ThrAGT
12
GGT
 
CGT
2
TGT
4
18
ACT
1.46
ACC
1.75
ACG
1.17
ACA
1.56
5.94%
ValAAC
8
GAC
 
CAC
3
TAC
2
13
GTT
1.39
GTC
1.7
GTG
1.47
GTA
0.85
5.41%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
7
GGA
 
CGA
3
TGA
3
ACT
 
GCT
4
 
 
 
 
17
TCT
1.8
TCC
1.83
TCG
1.56
TCA
1.64
AGT
1.15
AGC
1.61
 
 
 
 
9.59%
ArgACG
10
GCG
 
CCG
2
TCG
2
 
 
 
 
CCT
2
TCT
1
17
CGT
1.12
CGC
1.56
CGG
1.27
CGA
1.58
 
 
 
 
AGG
1.24
AGA
1.48
8.25%
LeuAAG
6
GAG
 
CAG
3
TAG
 
 
 
 
 
CAA
 
TAA
1
10
CTT
1.7
CTC
1.95
CTG
1.85
CTA
1.2
 
 
 
 
TTG
1.71
TTA
0.79
9.2%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
6
 
 
 
 
6
TTT
1.45
TTC
2
 
 
 
 
3.45%
AsnATT
 
GTT
7
 
 
 
 
7
AAT
1.49
AAC
1.66
 
 
 
 
3.15%
Lys 
 
 
 
CTT
9
TTT
3
12
 
 
 
 
AAG
2.2
AAA
1.61
3.81%
AspATC
 
GTC
11
 
 
 
 
11
GAT
2.14
GAC
1.96
 
 
 
 
4.1%
Glu 
 
 
 
CTC
10
TTC
4
14
 
 
 
 
GAG
2.2
GAA
2.13
4.33%
HisATG
1
GTG
6
 
 
 
 
7
CAT
1.5
CAC
1.43
 
 
 
 
2.93%
Gln 
 
 
 
CTG
5
TTG
3
8
 
 
 
 
CAG
1.88
CAA
2.01
3.89%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
10
GAT
2
 
 
TAT
1
13
ATT
1.6
ATC
1.97
 
 
ATA
1.04
4.61%
iMet/Met 
 
 
 
CAT
1/10
 
 
11
 
 
 
 
ATG
2
 
 
2%
TyrATA
 
GTA
7
 
 
 
 
7
TAT
1.3
TAC
1.32
 
 
 
 
2.62%
Supres 
 
TCA
 
CTA
 
TTA
1
1
Stop 
 
TGA
1.27
TAG
0.53
TAA
0.58
2.38%
CysACA
 
GCA
3
 
 
 
 
3
TGT
1.1
TGC
1.41
 
 
 
 
2.51%
Trp 
 
 
 
CCA
3
 
 
3
 
 
 
 
TGG
1.83
 
 
1.83%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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