tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.2 (February 2019) scan results 
Started: Tue Feb 26 14:47:56 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         14
Seqs w/at least 1 hit:  10
Bases read:             23292622 (x2 for both strands)
Bases in tRNAs:         3381
tRNAs predicted:        45
Av. tRNA length:        75
Script CPU time:        2.05 s
Scan CPU time:          72.66 s
Scan speed:             641.1 Kbp/sec

First pass search(es) ended: Tue Feb 26 14:48:09 PST 2019

Infernal Stats:
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Candidate tRNAs read:     45
Infernal-confirmed tRNAs:     45
Bases scanned by Infernal:  4281
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.37 s
Infernal CPU time:            31.71 s
Scan speed:               135.0 bp/sec

Infernal analysis of tRNAs ended: Tue Feb 26 14:48:57 PST 2019

Overall scan speed: 436232.3 bp/sec