tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 15:33:53 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         108
Seqs w/at least 1 hit:  29
Bases read:             30352192 (x2 for both strands)
Bases in tRNAs:         9347
tRNAs predicted:        111
Av. tRNA length:        84
Script CPU time:        3.71 s
Scan CPU time:          141.78 s
Scan speed:             428.2 Kbp/sec

First pass search(es) ended: Wed Aug 23 15:34:53 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     111
Infernal-confirmed tRNAs:     111
Bases scanned by Infernal:  11567
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.09 s
Infernal CPU time:            82.26 s
Scan speed:               140.6 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 15:36:53 PDT 2017

Overall scan speed: 265270.0 bp/sec