tRNA Gene Summary

Overview
High scoring set 2218
tRNAs decoding standard 20 AA 2217
Selenocysteine tRNAs (TCA) 1
Notable atypical predictions  
Anticodon/isotype mismatch 62
Unexpected anticodons 5
Non-canonical anticodon loop length 2
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 6353
Secondary filter (low feature scores, possible rep. element) 1133

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 126)
Arg TCT
2
Leu CAA
25
Asn GTT
1
Lys CTT
1
Lys TTT
5
Ile TAT
9
Tyr GTA
83
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
88
GGC
 
CGC
23
TGC
29
140
GlyACC
 
GCC
47
CCC
6
TCC
17
70
ProAGG
45
GGG
 
CGG
18
TGG
41
104
ThrAGT
57
GGT
 
CGT
22
TGT
15
94
ValAAC
152
GAC
 
CAC
67
TAC
23
242
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
22
GGA
 
CGA
36
TGA
20
ACT
 
GCT
67
 
 
 
 
145
ArgACG
76
GCG
 
CCG
9
TCG
24
 
 
 
 
CCT
48
TCT
16
173
LeuAAG
104
GAG
 
CAG
71
TAG
40
 
 
 
 
CAA
28
TAA
4
247
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
54
 
 
 
 
54
AsnATT
 
GTT
162
 
 
 
 
162
Lys 
 
 
 
CTT
21
TTT
23
44
AspATC
 
GTC
73
 
 
 
 
73
Glu 
 
 
 
CTC
11
TTC
12
23
HisATG
 
GTG
23
 
 
 
 
23
Gln 
 
 
 
CTG
91
TTG
36
127
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
97
GAT
 
CAT
 
TAT
9
106
iMet/Met 
 
 
 
CAT
165/71
 
 
236
TyrATA
 
GTA
83
 
 
 
 
83
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
64
 
 
 
 
64
Trp 
 
 
 
CCA
7
 
 
7
SelCys 
 
 
 
 
 
TCA
1
1