tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 11:46:26 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         33
Seqs w/at least 1 hit:  30
Bases read:             34718894 (x2 for both strands)
Bases in tRNAs:         32907
tRNAs predicted:        369
Av. tRNA length:        89
Script CPU time:        3.52 s
Scan CPU time:          171.71 s
Scan speed:             404.4 Kbp/sec

First pass search(es) ended: Tue Aug 22 11:46:58 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     369
Infernal-confirmed tRNAs:     361
Bases scanned by Infernal:  40287
% seq scanned by Infernal:  0.1 %
Script CPU time:          3.14 s
Infernal CPU time:            252.82 s
Scan speed:               159.4 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 11:51:49 PDT 2017

Overall scan speed: 161037.6 bp/sec