tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 352
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 5
Predicted pseudogenes 4
Total tRNAs 361
Intron Summary (tRNAs with introns: 229)
Ala AGC
15
Ala CGC
7
Ala TGC
7
Gly CCC
5
Gly TCC
1
Pro AGG
10
Pro CGG
3
Pro TGG
4
Thr AGT
1
Thr CGT
3
Thr TGT
1
Val TAC
3
Ser TGA
2
Ser GCT
2
Arg ACG
12
Arg CCG
4
Arg TCG
2
Arg CCT
3
Arg TCT
2
Leu AAG
13
Leu CAG
4
Leu TAG
2
Leu CAA
4
Leu TAA
2
Phe GAA
11
Lys CTT
20
Asp GTC
17
Glu CTC
17
Glu TTC
3
His GTG
7
Gln CTG
4
Gln TTG
3
Ile AAT
16
Ile TAT
3
Met CAT
6
Tyr GTA
9
Cys GCA
1
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 10515
Number of Codons: 5559212

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
15
GGC
 
CGC
7
TGC
9
31
GCT
1.88
GCC
2.62
GCG
1.62
GCA
1.53
7.65%
GlyACC
 
GCC
22
CCC
5
TCC
6
33
GGT
1.56
GGC
2.2
GGG
1.97
GGA
1.69
7.42%
ProAGG
10
GGG
 
CGG
3
TGG
4
17
CCT
1.62
CCC
2.13
CCG
1.67
CCA
2
7.42%
ThrAGT
11
GGT
 
CGT
3
TGT
3
17
ACT
1.13
ACC
2.1
ACG
1.4
ACA
1.51
6.14%
ValAAC
14
GAC
 
CAC
4
TAC
3
21
GTT
1.42
GTC
1.84
GTG
1.67
GTA
0.64
5.57%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
3
TGA
3
ACT
1
GCT
7
 
 
 
 
24
TCT
1.4
TCC
1.84
TCG
1.54
TCA
1.53
AGT
1
AGC
1.75
 
 
 
 
9.06%
ArgACG
14
GCG
 
CCG
4
TCG
2
 
 
 
 
CCT
4
TCT
4
28
CGT
0.92
CGC
1.52
CGG
1.34
CGA
1.38
 
 
 
 
AGG
1.82
AGA
1.43
8.41%
LeuAAG
13
GAG
 
CAG
4
TAG
2
 
 
 
 
CAA
4
TAA
2
25
CTT
1.47
CTC
2.35
CTG
1.91
CTA
0.7
 
 
 
 
TTG
1.81
TTA
0.45
8.69%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
11
 
 
 
 
11
TTT
1.5
TTC
1.73
 
 
 
 
3.23%
AsnATT
 
GTT
10
 
 
 
 
10
AAT
0.95
AAC
1.91
 
 
 
 
2.86%
Lys 
 
 
 
CTT
20
TTT
3
23
 
 
 
 
AAG
2.64
AAA
1.25
3.89%
AspATC
 
GTC
17
 
 
 
 
17
GAT
1.95
GAC
2.38
 
 
 
 
4.33%
Glu 
 
 
 
CTC
18
TTC
7
25
 
 
 
 
GAG
3.17
GAA
1.84
5.01%
HisATG
 
GTG
7
 
 
 
 
7
CAT
1.28
CAC
1.57
 
 
 
 
2.85%
Gln 
 
 
 
CTG
9
TTG
3
12
 
 
 
 
CAG
2.16
CAA
1.96
4.12%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
16
GAT
 
 
 
TAT
3
19
ATT
1.17
ATC
1.95
 
 
ATA
0.57
3.69%
iMet/Met 
 
 
 
CAT
7/6
 
 
13
 
 
 
 
ATG
1.9
 
 
1.9%
TyrATA
 
GTA
9
 
 
 
 
9
TAT
0.8
TAC
1.26
 
 
 
 
2.06%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.97
TAG
0.26
TAA
0.27
1.5%
CysACA
 
GCA
6
 
 
 
 
6
TGT
0.9
TGC
1.27
 
 
 
 
2.17%
Trp 
 
 
 
CCA
6
 
 
6
 
 
 
 
TGG
1.84
 
 
1.84%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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