tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Thu Nov  8 14:46:37 PST 2018

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         134
Seqs w/at least 1 hit:  90
Bases read:             154958356 (x2 for both strands)
Bases in tRNAs:         233517
tRNAs predicted:        3205
Av. tRNA length:        72
Script CPU time:        15.09 s
Scan CPU time:          772.21 s
Scan speed:             401.3 Kbp/sec

First pass search(es) ended: Thu Nov  8 14:49:16 PST 2018

Infernal Stats:
-----------
Candidate tRNAs read:     3205
Infernal-confirmed tRNAs:     2753
Bases scanned by Infernal:  297614
% seq scanned by Infernal:  0.1 %
Script CPU time:          16.50 s
Infernal CPU time:            1667.51 s
Scan speed:               178.5 bp/sec

Infernal analysis of tRNAs ended: Thu Nov  8 15:26:07 PST 2018

Overall scan speed: 125405.8 bp/sec