tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 01:52:19 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         27
Seqs w/at least 1 hit:  23
Bases read:             18065590 (x2 for both strands)
Bases in tRNAs:         11274
tRNAs predicted:        109
Av. tRNA length:        103
Script CPU time:        1.90 s
Scan CPU time:          88.55 s
Scan speed:             408.0 Kbp/sec

First pass search(es) ended: Fri Aug 25 01:52:42 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     109
Infernal-confirmed tRNAs:     109
Bases scanned by Infernal:  13454
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.29 s
Infernal CPU time:            87.56 s
Scan speed:               153.7 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 01:54:28 PDT 2017

Overall scan speed: 201512.4 bp/sec