tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 01:54:33 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         45
Seqs w/at least 1 hit:  24
Bases read:             17325407 (x2 for both strands)
Bases in tRNAs:         11261
tRNAs predicted:        114
Av. tRNA length:        98
Script CPU time:        1.95 s
Scan CPU time:          86.45 s
Scan speed:             400.8 Kbp/sec

First pass search(es) ended: Fri Aug 25 01:55:02 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     114
Infernal-confirmed tRNAs:     113
Bases scanned by Infernal:  13541
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.34 s
Infernal CPU time:            90.89 s
Scan speed:               149.0 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 01:56:52 PDT 2017

Overall scan speed: 191833.1 bp/sec