tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 11:51:58 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1847
Seqs w/at least 1 hit:  86
Bases read:             30684937 (x2 for both strands)
Bases in tRNAs:         12999
tRNAs predicted:        142
Av. tRNA length:        91
Script CPU time:        6.90 s
Scan CPU time:          379.13 s
Scan speed:             161.9 Kbp/sec

First pass search(es) ended: Tue Aug 22 12:02:21 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     142
Infernal-confirmed tRNAs:     139
Bases scanned by Infernal:  15839
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.81 s
Infernal CPU time:            136.68 s
Scan speed:               115.9 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 12:05:43 PDT 2017

Overall scan speed: 116779.3 bp/sec