tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 12:11:15 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         5537
Seqs w/at least 1 hit:  91
Bases read:             45171199 (x2 for both strands)
Bases in tRNAs:         15308
tRNAs predicted:        128
Av. tRNA length:        119
Script CPU time:        12.57 s
Scan CPU time:          948.40 s
Scan speed:             95.3 Kbp/sec

First pass search(es) ended: Tue Aug 22 12:39:23 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     128
Infernal-confirmed tRNAs:     108
Bases scanned by Infernal:  17868
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.58 s
Infernal CPU time:            149.22 s
Scan speed:               119.7 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 12:42:49 PDT 2017

Overall scan speed: 81186.9 bp/sec