tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 77
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 6
Predicted pseudogenes 24
Total tRNAs 108
Intron Summary (tRNAs with introns: 74)
Ala AGC
2
Ala GGC
1
Ala CGC
1
Ala TGC
1
Gly ACC
1
Gly GCC
2
Gly CCC
1
Gly TCC
1
Pro AGG
1
Pro CGG
1
Pro TGG
4
Thr AGT
3
Thr CGT
1
Thr TGT
3
Ser CGA
3
Ser ACT
2
Arg ACG
2
Arg CCG
1
Arg TCG
5
Arg TCT
3
Leu AAG
1
Leu CAG
1
Leu CAA
1
Phe GAA
2
Asn ATT
1
Asn GTT
3
Lys CTT
7
Lys TTT
1
Asp ATC
1
Asp GTC
1
Glu CTC
5
Glu TTC
1
His GTG
2
Gln TTG
1
Ile GAT
1
iMet CAT
1
Met CAT
2
Supres TCA
1
Cys GCA
1
Trp CCA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 198352

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
2
GGC
1
CGC
1
TGC
2
6
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
1
GCC
3
CCC
1
TCC
2
7
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
1
GGG
 
CGG
2
TGG
4
7
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
1
TGT
4
8
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
 
GAC
 
CAC
 
TAC
1
1
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
1
GGA
 
CGA
4
TGA
1
ACT
2
GCT
 
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
 
CCG
2
TCG
5
 
 
 
 
CCT
1
TCT
4
15
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
1
GAG
 
CAG
1
TAG
 
 
 
 
 
CAA
1
TAA
 
3
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
2
GTT
4
 
 
 
 
6
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
7
TTT
2
9
 
 
 
 
AAG
0
AAA
0
0%
AspATC
1
GTC
1
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
5
TTC
3
8
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
2
 
 
 
 
2
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
 
TTG
1
1
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
 
GAT
1
 
 
TAT
 
1
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
1/5
 
 
6
 
 
 
 
ATG
0
 
 
0%
TyrATA
1
GTA
1
 
 
 
 
2
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
 
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
1
 
 
1
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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