tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 03:04:31 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         24423
Seqs w/at least 1 hit:  932
Bases read:             162948716 (x2 for both strands)
Bases in tRNAs:         146665
tRNAs predicted:        1753
Av. tRNA length:        83
Script CPU time:        50.09 s
Scan CPU time:          4222.37 s
Scan speed:             77.2 Kbp/sec

First pass search(es) ended: Fri Aug 25 05:04:53 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     1753
Infernal-confirmed tRNAs:     1482
Bases scanned by Infernal:  181617
% seq scanned by Infernal:  0.1 %
Script CPU time:          28.13 s
Infernal CPU time:            1458.69 s
Scan speed:               124.5 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 05:39:55 PDT 2017

Overall scan speed: 56586.5 bp/sec