tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 1186
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 5
tRNAs with undetermined or unknown isotypes 75
Predicted pseudogenes 216
Total tRNAs 1482
Intron Summary (tRNAs with introns: 738)
Ala AGC
15
Ala CGC
4
Ala TGC
4
Gly ACC
2
Gly GCC
9
Gly CCC
36
Gly TCC
7
Pro AGG
9
Pro CGG
3
Pro TGG
5
Thr AGT
426
Thr GGT
3
Thr CGT
3
Thr TGT
3
Val AAC
12
Val GAC
1
Val CAC
3
Val TAC
6
Ser AGA
11
Ser CGA
4
Ser TGA
6
Arg ACG
8
Arg CCG
1
Arg TCG
8
Arg CCT
3
Arg TCT
5
Leu AAG
7
Leu CAG
2
Leu TAG
4
Leu CAA
5
Phe GAA
9
Asn ATT
1
Asn GTT
7
Lys CTT
11
Lys TTT
8
Glu CTC
6
Glu TTC
9
His GTG
6
Gln CTG
4
Gln TTG
6
Ile AAT
17
Ile TAT
2
iMet CAT
5
Met CAT
7
Tyr ATA
2
Tyr GTA
5
Supres CTA
5
Cys ACA
1
Cys GCA
4
Trp CCA
6
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 1563072

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
20
GGC
 
CGC
4
TGC
134
158
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
2
GCC
16
CCC
36
TCC
9
63
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
9
GGG
 
CGG
3
TGG
123
135
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
477
GGT
3
CGT
3
TGT
3
486
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
12
GAC
2
CAC
3
TAC
6
23
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
59
GGA
1
CGA
5
TGA
177
ACT
 
GCT
6
 
 
 
 
248
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
8
GCG
 
CCG
1
TCG
8
 
 
 
 
CCT
4
TCT
5
26
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
7
GAG
 
CAG
2
TAG
5
 
 
 
 
CAA
7
TAA
3
24
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
10
 
 
 
 
10
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
2
GTT
8
 
 
 
 
10
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
11
TTT
9
20
 
 
 
 
AAG
0
AAA
0
0%
AspATC
3
GTC
12
 
 
 
 
15
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
6
TTC
9
15
 
 
 
 
GAG
0
GAA
0
0%
HisATG
46
GTG
7
 
 
 
 
53
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
7
TTG
6
13
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
18
GAT
1
 
 
TAT
3
22
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
5/9
 
 
14
 
 
 
 
ATG
0
 
 
0%
TyrATA
2
GTA
35
 
 
 
 
37
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
5
TTA
 
5
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
1
GCA
4
 
 
 
 
5
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
7
 
 
7
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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