tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 87
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 3
Predicted pseudogenes 12
Total tRNAs 102
Intron Summary (tRNAs with introns: 70)
Ala AGC
3
Ala TGC
2
Gly GCC
6
Gly CCC
2
Pro AGG
1
Pro CGG
1
Pro TGG
1
Thr AGT
3
Thr CGT
1
Val AAC
4
Val CAC
1
Val TAC
1
Ser CGA
1
Ser TGA
1
Ser GCT
1
Arg ACG
2
Arg TCG
1
Arg CCT
1
Arg TCT
1
Leu AAG
3
Leu TAG
1
Leu CAA
1
Leu TAA
1
Phe GAA
3
Asn GTT
3
Lys CTT
2
Lys TTT
1
Asp GTC
4
Glu CTC
3
Glu TTC
1
His GTG
1
Ile AAT
2
Ile TAT
1
Met CAT
1
Tyr GTA
5
Cys GCA
1
Trp CCA
2
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 260909

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
3
GGC
 
CGC
 
TGC
3
6
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
6
CCC
2
TCC
2
10
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
1
GGG
 
CGG
1
TGG
1
3
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
1
TGT
1
5
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
4
GAC
 
CAC
1
TAC
1
6
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
2
GGA
 
CGA
1
TGA
2
ACT
 
GCT
1
 
 
 
 
6
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
2
TCT
2
9
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
3
GAG
2
CAG
1
TAG
1
 
 
 
 
CAA
1
TAA
1
9
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
4
 
 
 
 
4
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
4
 
 
 
 
4
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
5
TTT
2
7
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
5
 
 
 
 
5
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
3
TTC
2
5
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
3
 
 
 
 
3
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
 
TTG
 
0
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
2
GAT
1
 
 
TAT
1
4
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
2/2
 
 
4
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
5
 
 
 
 
5
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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