tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 13:21:34 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         54
Seqs w/at least 1 hit:  26
Bases read:             32539172 (x2 for both strands)
Bases in tRNAs:         11141
tRNAs predicted:        119
Av. tRNA length:        93
Script CPU time:        3.37 s
Scan CPU time:          139.15 s
Scan speed:             467.7 Kbp/sec

First pass search(es) ended: Tue Aug 22 13:22:11 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     119
Infernal-confirmed tRNAs:     108
Bases scanned by Infernal:  13521
% seq scanned by Infernal:  0.0 %
Script CPU time:          1.44 s
Infernal CPU time:            91.35 s
Scan speed:               148.0 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 13:24:06 PDT 2017

Overall scan speed: 276564.3 bp/sec