tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 13:24:14 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         6412
Seqs w/at least 1 hit:  100
Bases read:             33583335 (x2 for both strands)
Bases in tRNAs:         11796
tRNAs predicted:        120
Av. tRNA length:        98
Script CPU time:        12.38 s
Scan CPU time:          1034.76 s
Scan speed:             64.9 Kbp/sec

First pass search(es) ended: Tue Aug 22 13:56:41 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     120
Infernal-confirmed tRNAs:     112
Bases scanned by Infernal:  14167
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.95 s
Infernal CPU time:            144.02 s
Scan speed:               98.4 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 14:00:17 PDT 2017

Overall scan speed: 56248.3 bp/sec