tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 06:19:01 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         28039
Seqs w/at least 1 hit:  91
Bases read:             90375240 (x2 for both strands)
Bases in tRNAs:         9075
tRNAs predicted:        113
Av. tRNA length:        80
Script CPU time:        43.70 s
Scan CPU time:          4473.28 s
Scan speed:             40.4 Kbp/sec

First pass search(es) ended: Fri Aug 25 08:38:32 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     113
Infernal-confirmed tRNAs:     111
Bases scanned by Infernal:  11328
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.54 s
Infernal CPU time:            119.66 s
Scan speed:               94.7 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 08:41:38 PDT 2017

Overall scan speed: 38961.7 bp/sec