tRNA Gene Summary

Use of uninitialized value in addition (+) at ./analyze-tRNAs2 line 509. Use of uninitialized value in addition (+) at ./analyze-tRNAs2 line 510.
Overview
tRNAs decoding standard 20 AA 105
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 2
tRNAs with undetermined or unknown isotypes 1
Predicted pseudogenes 11
Total tRNAs 119
Intron Summary (tRNAs with introns: 9)
Arg CCT
2
Leu TAA
1
Asn ATT
1
Ile TAT
1
Tyr GTA
3
Supres CTA
1

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 33807

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
6
GGC
 
CGC
1
TGC
5
12
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
5
CCC
 
TCC
3
8
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
3
GGG
 
CGG
1
TGG
1
5
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
3
GGT
 
CGT
1
TGT
1
5
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
7
GAC
 
CAC
1
TAC
2
10
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
4
GGA
 
CGA
1
TGA
1
ACT
 
GCT
2
 
 
 
 
8
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
4
GCG
 
CCG
1
TCG
1
 
 
 
 
CCT
5
TCT
2
13
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
2
GAG
 
CAG
 
TAG
1
 
 
 
 
CAA
3
TAA
2
8
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
1
GTT
4
 
 
 
 
5
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
6
TTT
2
8
 
 
 
 
AAG
0
AAA
0
0%
AspATC
1
GTC
4
 
 
 
 
5
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
3
TTC
3
6
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
2
 
 
 
 
2
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
1
TTG
3
4
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
4
GAT
 
 
 
TAT
1
5
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
1/-
 
 
1
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
3
 
 
 
 
3
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
1
CTA
1
TTA
 
2
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
1
 
 
 
 
1
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
2
 
 
2
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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