tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 08:49:53 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         1168
Seqs w/at least 1 hit:  86
Bases read:             39063757 (x2 for both strands)
Bases in tRNAs:         7102
tRNAs predicted:        95
Av. tRNA length:        74
Script CPU time:        6.99 s
Scan CPU time:          286.36 s
Scan speed:             272.8 Kbp/sec

First pass search(es) ended: Fri Aug 25 08:56:50 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     95
Infernal-confirmed tRNAs:     91
Bases scanned by Infernal:  9002
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.32 s
Infernal CPU time:            99.79 s
Scan speed:               90.2 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 08:59:30 PDT 2017

Overall scan speed: 197561.1 bp/sec