tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 08:59:40 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         2313
Seqs w/at least 1 hit:  90
Bases read:             40287170 (x2 for both strands)
Bases in tRNAs:         7179
tRNAs predicted:        96
Av. tRNA length:        74
Script CPU time:        8.22 s
Scan CPU time:          462.94 s
Scan speed:             174.0 Kbp/sec

First pass search(es) ended: Fri Aug 25 09:12:09 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     96
Infernal-confirmed tRNAs:     94
Bases scanned by Infernal:  9081
% seq scanned by Infernal:  0.0 %
Script CPU time:          2.48 s
Infernal CPU time:            103.70 s
Scan speed:               87.6 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 09:14:53 PDT 2017

Overall scan speed: 139561.3 bp/sec