tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 09:23:46 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1059
Seqs w/at least 1 hit:  93
Bases read:             11859274 (x2 for both strands)
Bases in tRNAs:         12246
tRNAs predicted:        163
Av. tRNA length:        75
Script CPU time:        3.21 s
Scan CPU time:          192.46 s
Scan speed:             123.2 Kbp/sec

First pass search(es) ended: Fri Aug 25 09:29:14 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     163
Infernal-confirmed tRNAs:     154
Bases scanned by Infernal:  15498
% seq scanned by Infernal:  0.1 %
Script CPU time:          3.02 s
Infernal CPU time:            143.03 s
Scan speed:               108.4 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 09:32:42 PDT 2017

Overall scan speed: 69409.3 bp/sec