tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 07:31:12 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         461
Seqs w/at least 1 hit:  49
Bases read:             11802364 (x2 for both strands)
Bases in tRNAs:         13554
tRNAs predicted:        172
Av. tRNA length:        78
Script CPU time:        2.03 s
Scan CPU time:          102.10 s
Scan speed:             231.2 Kbp/sec

First pass search(es) ended: Sun Aug 20 07:33:42 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     172
Infernal-confirmed tRNAs:     172
Bases scanned by Infernal:  16967
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.37 s
Infernal CPU time:            134.84 s
Scan speed:               125.8 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 07:36:55 PDT 2017

Overall scan speed: 97806.9 bp/sec