tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 07:40:53 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         25
Seqs w/at least 1 hit:  18
Bases read:             11489728 (x2 for both strands)
Bases in tRNAs:         19840
tRNAs predicted:        250
Av. tRNA length:        79
Script CPU time:        1.32 s
Scan CPU time:          41.71 s
Scan speed:             550.9 Kbp/sec

First pass search(es) ended: Sun Aug 20 07:41:08 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     250
Infernal-confirmed tRNAs:     250
Bases scanned by Infernal:  24840
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.21 s
Infernal CPU time:            164.55 s
Scan speed:               151.0 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 07:44:40 PDT 2017

Overall scan speed: 109535.5 bp/sec