tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 250
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 250
Intron Summary (tRNAs with introns: 55)
Pro TGG
10
Ser CGA
1
Ser GCT
4
Leu TAG
3
Leu CAA
10
Phe GAA
9
Lys TTT
5
Tyr GTA
8
Cys GCA
1
Trp CCA
4
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5045
Number of Codons: 2357478

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
11
GGC
 
CGC
 
TGC
5
16
GCT
1.97
GCC
1.22
GCG
0.63
GCA
1.62
5.44%
GlyACC
 
GCC
14
CCC
2
TCC
2
18
GGT
2.24
GGC
1
GGG
0.63
GGA
1.13
5%
ProAGG
2
GGG
 
CGG
 
TGG
10
12
CCT
1.33
CCC
0.7
CCG
0.54
CCA
1.73
4.3%
ThrAGT
12
GGT
 
CGT
1
TGT
4
17
ACT
1.94
ACC
1.2
ACG
0.83
ACA
1.77
5.74%
ValAAC
12
GAC
 
CAC
2
TAC
2
16
GTT
2.14
GTC
1.11
GTG
1.11
GTA
1.21
5.57%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
10
GGA
 
CGA
1
TGA
3
ACT
 
GCT
4
 
 
 
 
18
TCT
2.2
TCC
1.39
TCG
0.87
TCA
1.87
AGT
1.45
AGC
1
 
 
 
 
8.78%
ArgACG
6
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
11
19
CGT
0.62
CGC
0.27
CGG
0.19
CGA
0.32
 
 
 
 
AGG
0.98
AGA
2.11
4.49%
LeuAAG
 
GAG
1
CAG
 
TAG
3
 
 
 
 
CAA
10
TAA
5
19
CTT
1.24
CTC
0.56
CTG
1.1
CTA
1.36
 
 
 
 
TTG
2.7
TTA
2.64
9.6%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
9
 
 
 
 
9
TTT
2.67
TTC
1.83
 
 
 
 
4.5%
AsnATT
 
GTT
10
 
 
 
 
10
AAT
3.62
AAC
2.44
 
 
 
 
6.06%
Lys 
 
 
 
CTT
12
TTT
5
17
 
 
 
 
AAG
3.06
AAA
4.23
7.29%
AspATC
 
GTC
15
 
 
 
 
15
GAT
3.78
GAC
2
 
 
 
 
5.78%
Glu 
 
 
 
CTC
2
TTC
13
15
 
 
 
 
GAG
1.96
GAA
4.52
6.48%
HisATG
 
GTG
5
 
 
 
 
5
CAT
1.39
CAC
0.77
 
 
 
 
2.16%
Gln 
 
 
 
CTG
1
TTG
7
8
 
 
 
 
CAG
1.25
CAA
2.7
3.95%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
10
GAT
 
 
 
TAT
 
10
ATT
3.01
ATC
1.69
 
 
ATA
1.83
6.53%
iMet/Met 
 
 
 
CAT
5/5
 
 
10
 
 
 
 
ATG
2.09
 
 
2.09%
TyrATA
 
GTA
8
 
 
 
 
8
TAT
1.9
TAC
1.44
 
 
 
 
3.34%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.11
TAG
0.07
TAA
0.15
0.33%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0.8
TGC
0.49
 
 
 
 
1.29%
Trp 
 
 
 
CCA
4
 
 
4
 
 
 
 
TGG
1.06
 
 
1.06%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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