tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 07:52:59 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         16
Seqs w/at least 1 hit:  16
Bases read:             11945931 (x2 for both strands)
Bases in tRNAs:         21448
tRNAs predicted:        270
Av. tRNA length:        79
Script CPU time:        1.33 s
Scan CPU time:          42.74 s
Scan speed:             559.0 Kbp/sec

First pass search(es) ended: Sun Aug 20 07:53:12 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     270
Infernal-confirmed tRNAs:     270
Bases scanned by Infernal:  26848
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.30 s
Infernal CPU time:            176.55 s
Scan speed:               152.1 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 07:56:53 PDT 2017

Overall scan speed: 107176.8 bp/sec