tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 07:56:56 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         212
Seqs w/at least 1 hit:  38
Bases read:             11781395 (x2 for both strands)
Bases in tRNAs:         21939
tRNAs predicted:        275
Av. tRNA length:        79
Script CPU time:        1.78 s
Scan CPU time:          69.45 s
Scan speed:             339.3 Kbp/sec

First pass search(es) ended: Sun Aug 20 07:58:16 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     275
Infernal-confirmed tRNAs:     275
Bases scanned by Infernal:  27439
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.76 s
Infernal CPU time:            192.72 s
Scan speed:               142.4 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 08:02:31 PDT 2017

Overall scan speed: 88346.1 bp/sec