tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 08:22:45 PDT 2017

------------------------------------------------------------
Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
------------------------------------------------------------

First-pass Stats:
---------------
Sequences read:         506
Seqs w/at least 1 hit:  52
Bases read:             11716503 (x2 for both strands)
Bases in tRNAs:         15084
tRNAs predicted:        189
Av. tRNA length:        79
Script CPU time:        2.17 s
Scan CPU time:          108.44 s
Scan speed:             216.1 Kbp/sec

First pass search(es) ended: Sun Aug 20 08:25:36 PDT 2017

Infernal Stats:
-----------
Candidate tRNAs read:     189
Infernal-confirmed tRNAs:     189
Bases scanned by Infernal:  18853
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.44 s
Infernal CPU time:            147.80 s
Scan speed:               127.6 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 08:29:00 PDT 2017

Overall scan speed: 89833.3 bp/sec