tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 08:39:10 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         95
Seqs w/at least 1 hit:  20
Bases read:             11667470 (x2 for both strands)
Bases in tRNAs:         22172
tRNAs predicted:        278
Av. tRNA length:        79
Script CPU time:        1.57 s
Scan CPU time:          54.08 s
Scan speed:             431.5 Kbp/sec

First pass search(es) ended: Sun Aug 20 08:39:49 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     278
Infernal-confirmed tRNAs:     278
Bases scanned by Infernal:  27732
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.37 s
Infernal CPU time:            183.27 s
Scan speed:               151.3 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 08:43:39 PDT 2017

Overall scan speed: 96709.1 bp/sec