tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 278
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 278
Intron Summary (tRNAs with introns: 61)
Pro TGG
10
Ser CGA
1
Ser GCT
4
Leu TAG
3
Leu CAA
10
Phe GAA
10
Lys TTT
7
Ile TAT
2
Tyr GTA
8
Trp CCA
6
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 3930
Number of Codons: 1479783

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
12
GGC
 
CGC
 
TGC
5
17
GCT
2.08
GCC
1.3
GCG
0.64
GCA
1.61
5.63%
GlyACC
 
GCC
16
CCC
2
TCC
3
21
GGT
2.41
GGC
1.04
GGG
0.65
GGA
1.13
5.23%
ProAGG
2
GGG
 
CGG
 
TGG
10
12
CCT
1.33
CCC
0.7
CCG
0.53
CCA
1.77
4.33%
ThrAGT
11
GGT
 
CGT
1
TGT
4
16
ACT
1.96
ACC
1.28
ACG
0.81
ACA
1.72
5.77%
ValAAC
14
GAC
 
CAC
2
TAC
2
18
GTT
2.18
GTC
1.19
GTG
1.15
GTA
1.19
5.71%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
11
GGA
 
CGA
1
TGA
3
ACT
 
GCT
4
 
 
 
 
19
TCT
2.2
TCC
1.42
TCG
0.86
TCA
1.76
AGT
1.39
AGC
0.99
 
 
 
 
8.62%
ArgACG
6
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
11
19
CGT
0.62
CGC
0.27
CGG
0.19
CGA
0.31
 
 
 
 
AGG
0.95
AGA
2.13
4.47%
LeuAAG
 
GAG
1
CAG
 
TAG
3
 
 
 
 
CAA
10
TAA
7
21
CTT
1.2
CTC
0.55
CTG
1.09
CTA
1.33
 
 
 
 
TTG
2.74
TTA
2.49
9.4%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
10
 
 
 
 
10
TTT
2.55
TTC
1.86
 
 
 
 
4.41%
AsnATT
 
GTT
10
 
 
 
 
10
AAT
3.43
AAC
2.46
 
 
 
 
5.89%
Lys 
 
 
 
CTT
14
TTT
7
21
 
 
 
 
AAG
3.13
AAA
4.01
7.14%
AspATC
 
GTC
16
 
 
 
 
16
GAT
3.7
GAC
2.09
 
 
 
 
5.79%
Glu 
 
 
 
CTC
2
TTC
15
17
 
 
 
 
GAG
1.96
GAA
4.45
6.41%
HisATG
 
GTG
7
 
 
 
 
7
CAT
1.38
CAC
0.81
 
 
 
 
2.19%
Gln 
 
 
 
CTG
1
TTG
9
10
 
 
 
 
CAG
1.23
CAA
2.65
3.88%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
14
GAT
 
 
 
TAT
2
16
ATT
2.93
ATC
1.75
 
 
ATA
1.75
6.43%
iMet/Met 
 
 
 
CAT
5/5
 
 
10
 
 
 
 
ATG
2.09
 
 
2.09%
TyrATA
 
GTA
8
 
 
 
 
8
TAT
1.8
TAC
1.52
 
 
 
 
3.32%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.09
TAG
0.06
TAA
0.13
0.28%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0.8
TGC
0.5
 
 
 
 
1.3%
Trp 
 
 
 
CCA
6
 
 
6
 
 
 
 
TGG
1.08
 
 
1.08%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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