tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 09:10:11 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         17
Seqs w/at least 1 hit:  16
Bases read:             11550521 (x2 for both strands)
Bases in tRNAs:         21868
tRNAs predicted:        274
Av. tRNA length:        79
Script CPU time:        1.32 s
Scan CPU time:          41.28 s
Scan speed:             559.6 Kbp/sec

First pass search(es) ended: Sun Aug 20 09:10:24 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     274
Infernal-confirmed tRNAs:     274
Bases scanned by Infernal:  27348
% seq scanned by Infernal:  0.1 %
Script CPU time:          2.25 s
Infernal CPU time:            179.04 s
Scan speed:               152.7 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 09:14:09 PDT 2017

Overall scan speed: 103180.3 bp/sec