tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 09:14:13 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1780
Seqs w/at least 1 hit:  15
Bases read:             10075712 (x2 for both strands)
Bases in tRNAs:         1243
tRNAs predicted:        15
Av. tRNA length:        82
Script CPU time:        3.50 s
Scan CPU time:          295.13 s
Scan speed:             68.3 Kbp/sec

First pass search(es) ended: Sun Aug 20 09:23:21 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     15
Infernal-confirmed tRNAs:     14
Bases scanned by Infernal:  1543
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.41 s
Infernal CPU time:            16.63 s
Scan speed:               92.8 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 09:23:48 PDT 2017

Overall scan speed: 63837.0 bp/sec