tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Sun Aug 20 09:58:48 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1785
Seqs w/at least 1 hit:  6
Bases read:             10082532 (x2 for both strands)
Bases in tRNAs:         467
tRNAs predicted:        6
Av. tRNA length:        77
Script CPU time:        3.63 s
Scan CPU time:          296.47 s
Scan speed:             68.0 Kbp/sec

First pass search(es) ended: Sun Aug 20 10:07:52 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     6
Infernal-confirmed tRNAs:     5
Bases scanned by Infernal:  587
% seq scanned by Infernal:  0.0 %
Script CPU time:          0.15 s
Infernal CPU time:            5.80 s
Scan speed:               101.2 bp/sec

Infernal analysis of tRNAs ended: Sun Aug 20 10:08:03 PDT 2017

Overall scan speed: 65888.1 bp/sec