tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0 (December 2017) scan results 
Started: Wed Jan 10 18:00:33 PST 2018

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         867
Seqs w/at least 1 hit:  10
Bases read:             708735318 (x2 for both strands)
Bases in tRNAs:         51093
tRNAs predicted:        686
Av. tRNA length:        74
Script CPU time:        65.51 s
Scan CPU time:          3292.50 s
Scan speed:             430.5 Kbp/sec

First pass search(es) ended: Wed Jan 10 18:09:23 PST 2018

Infernal Stats:
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Candidate tRNAs read:     686
Infernal-confirmed tRNAs:     583
Bases scanned by Infernal:  64813
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.97 s
Infernal CPU time:            384.45 s
Scan speed:               168.6 bp/sec

Infernal analysis of tRNAs ended: Wed Jan 10 18:17:47 PST 2018

Overall scan speed: 378352.4 bp/sec