tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 275
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 0
tRNAs with undetermined or unknown isotypes 0
Predicted pseudogenes 0
Total tRNAs 275
Intron Summary (tRNAs with introns: 61)
Pro TGG
10
Ser CGA
1
Ser GCT
4
Leu TAG
3
Leu CAA
10
Phe GAA
10
Lys TTT
7
Ile TAT
2
Tyr GTA
8
Trp CCA
6
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 5894
Number of Codons: 2942229

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
11
GGC
 
CGC
 
TGC
5
16
GCT
1.96
GCC
1.19
GCG
0.61
GCA
1.6
5.36%
GlyACC
 
GCC
16
CCC
2
TCC
3
21
GGT
2.19
GGC
0.97
GGG
0.62
GGA
1.13
4.91%
ProAGG
2
GGG
 
CGG
 
TGG
10
12
CCT
1.33
CCC
0.69
CCG
0.54
CCA
1.76
4.32%
ThrAGT
11
GGT
 
CGT
1
TGT
4
16
ACT
2
ACC
1.25
ACG
0.83
ACA
1.83
5.91%
ValAAC
14
GAC
 
CAC
2
TAC
2
18
GTT
2.12
GTC
1.11
GTG
1.07
GTA
1.19
5.49%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
11
GGA
 
CGA
1
TGA
3
ACT
 
GCT
4
 
 
 
 
19
TCT
2.2
TCC
1.42
TCG
0.87
TCA
1.91
AGT
1.46
AGC
1.01
 
 
 
 
8.87%
ArgACG
6
GCG
 
CCG
1
TCG
 
 
 
 
 
CCT
1
TCT
11
19
CGT
0.63
CGC
0.28
CGG
0.2
CGA
0.36
 
 
 
 
AGG
0.98
AGA
2.13
4.58%
LeuAAG
 
GAG
1
CAG
 
TAG
3
 
 
 
 
CAA
10
TAA
7
21
CTT
1.24
CTC
0.57
CTG
1.07
CTA
1.35
 
 
 
 
TTG
2.61
TTA
2.59
9.43%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
10
 
 
 
 
10
TTT
2.65
TTC
1.8
 
 
 
 
4.45%
AsnATT
 
GTT
10
 
 
 
 
10
AAT
3.63
AAC
2.44
 
 
 
 
6.07%
Lys 
 
 
 
CTT
14
TTT
7
21
 
 
 
 
AAG
3.01
AAA
4.25
7.26%
AspATC
 
GTC
16
 
 
 
 
16
GAT
3.72
GAC
1.97
 
 
 
 
5.69%
Glu 
 
 
 
CTC
2
TTC
14
16
 
 
 
 
GAG
1.92
GAA
4.49
6.41%
HisATG
 
GTG
7
 
 
 
 
7
CAT
1.4
CAC
0.79
 
 
 
 
2.19%
Gln 
 
 
 
CTG
1
TTG
9
10
 
 
 
 
CAG
1.26
CAA
2.73
3.99%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
13
GAT
 
 
 
TAT
2
15
ATT
3.01
ATC
1.7
 
 
ATA
1.82
6.53%
iMet/Met 
 
 
 
CAT
5/5
 
 
10
 
 
 
 
ATG
2.06
 
 
2.06%
TyrATA
 
GTA
8
 
 
 
 
8
TAT
1.9
TAC
1.48
 
 
 
 
3.38%
Supres 
 
TCA
 
CTA
 
TTA
 
0
Stop 
 
TGA
0.23
TAG
0.1
TAA
0.24
0.57%
CysACA
 
GCA
4
 
 
 
 
4
TGT
0.8
TGC
0.53
 
 
 
 
1.33%
Trp 
 
 
 
CCA
6
 
 
6
 
 
 
 
TGG
1.07
 
 
1.07%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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