tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 09:36:32 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         30
Seqs w/at least 1 hit:  16
Bases read:             11554764 (x2 for both strands)
Bases in tRNAs:         19115
tRNAs predicted:        249
Av. tRNA length:        76
Script CPU time:        1.31 s
Scan CPU time:          43.71 s
Scan speed:             528.7 Kbp/sec

First pass search(es) ended: Fri Aug 25 09:36:46 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     249
Infernal-confirmed tRNAs:     247
Bases scanned by Infernal:  24095
% seq scanned by Infernal:  0.1 %
Script CPU time:          1.99 s
Infernal CPU time:            160.32 s
Scan speed:               150.3 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 09:39:45 PDT 2017

Overall scan speed: 111462.5 bp/sec