tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 09:39:48 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         32
Seqs w/at least 1 hit:  11
Bases read:             11733154 (x2 for both strands)
Bases in tRNAs:         28811
tRNAs predicted:        342
Av. tRNA length:        84
Script CPU time:        1.41 s
Scan CPU time:          56.47 s
Scan speed:             415.6 Kbp/sec

First pass search(es) ended: Fri Aug 25 09:40:05 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     342
Infernal-confirmed tRNAs:     337
Bases scanned by Infernal:  35632
% seq scanned by Infernal:  0.2 %
Script CPU time:          2.39 s
Infernal CPU time:            227.93 s
Scan speed:               156.3 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 09:44:05 PDT 2017

Overall scan speed: 81423.7 bp/sec