tRNA Gene Summary

Overview
tRNAs decoding standard 20 AA 307
Selenocysteine tRNAs (TCA) 0
Possible suppressor tRNAs (CTA,TTA,TCA) 1
tRNAs with undetermined or unknown isotypes 6
Predicted pseudogenes 23
Total tRNAs 337
Intron Summary (tRNAs with introns: 178)
Ala AGC
1
Ala CGC
3
Pro CGG
6
Thr TGT
2
Val AAC
2
Val TAC
1
Ser CGA
8
Ser TGA
32
Ser GCT
8
Arg ACG
3
Arg CCG
8
Arg TCG
1
Arg CCT
1
Leu CAG
8
Leu TAG
2
Leu CAA
3
Leu TAA
26
Lys CTT
4
Lys TTT
9
Gln TTG
1
Ile AAT
5
Ile TAT
15
iMet CAT
15
Met CAT
3
Tyr GTA
2
Supres CTA
1
Trp CCA
8
 

The codon usage of this genome was generated from protein-coding genes annotated in GenBank or RefSeq.
Number of CDS: 0
Number of Codons: 1955

Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
AlaAGC
1
GGC
 
CGC
3
TGC
12
16
GCT
0
GCC
0
GCG
0
GCA
0
0%
GlyACC
 
GCC
5
CCC
1
TCC
10
16
GGT
0
GGC
0
GGG
0
GGA
0
0%
ProAGG
28
GGG
 
CGG
7
TGG
3
38
CCT
0
CCC
0
CCG
0
CCA
0
0%
ThrAGT
4
GGT
 
CGT
7
TGT
4
15
ACT
0
ACC
0
ACG
0
ACA
0
0%
ValAAC
2
GAC
 
CAC
9
TAC
6
17
GTT
0
GTC
0
GTG
0
GTA
0
0%
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
SerAGA
1
GGA
 
CGA
8
TGA
32
ACT
 
GCT
8
 
 
 
 
49
TCT
0
TCC
0
TCG
0
TCA
0
AGT
0
AGC
0
 
 
 
 
0%
ArgACG
3
GCG
 
CCG
8
TCG
1
 
 
 
 
CCT
2
TCT
6
20
CGT
0
CGC
0
CGG
0
CGA
0
 
 
 
 
AGG
0
AGA
0
0%
LeuAAG
 
GAG
 
CAG
8
TAG
2
 
 
 
 
CAA
3
TAA
26
39
CTT
0
CTC
0
CTG
0
CTA
0
 
 
 
 
TTG
0
TTA
0
0%
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
PheAAA
 
GAA
3
 
 
 
 
3
TTT
0
TTC
0
 
 
 
 
0%
AsnATT
 
GTT
2
 
 
 
 
2
AAT
0
AAC
0
 
 
 
 
0%
Lys 
 
 
 
CTT
4
TTT
9
13
 
 
 
 
AAG
0
AAA
0
0%
AspATC
 
GTC
2
 
 
 
 
2
GAT
0
GAC
0
 
 
 
 
0%
Glu 
 
 
 
CTC
4
TTC
1
5
 
 
 
 
GAG
0
GAA
0
0%
HisATG
 
GTG
16
 
 
 
 
16
CAT
0
CAC
0
 
 
 
 
0%
Gln 
 
 
 
CTG
8
TTG
1
9
 
 
 
 
CAG
0
CAA
0
0%
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
Codon Usage (Percentage)
IleAAT
5
GAT
 
 
 
TAT
15
20
ATT
0
ATC
0
 
 
ATA
0
0%
iMet/Met 
 
 
 
CAT
26/3
 
 
29
 
 
 
 
ATG
0
 
 
0%
TyrATA
 
GTA
2
 
 
 
 
2
TAT
0
TAC
0
 
 
 
 
0%
Supres 
 
TCA
 
CTA
1
TTA
 
1
Stop 
 
TGA
0
TAG
0
TAA
0
0%
CysACA
 
GCA
9
 
 
 
 
9
TGT
0
TGC
0
 
 
 
 
0%
Trp 
 
 
 
CCA
8
 
 
8
 
 
 
 
TGG
0
 
 
0%
SelCys 
 
 
 
 
 
TCA
 
0
 
 
 
 
 
 
 
 
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