tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Fri Aug 25 09:44:08 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         5
Seqs w/at least 1 hit:  4
Bases read:             11634473 (x2 for both strands)
Bases in tRNAs:         21403
tRNAs predicted:        279
Av. tRNA length:        76
Script CPU time:        1.31 s
Scan CPU time:          47.85 s
Scan speed:             486.3 Kbp/sec

First pass search(es) ended: Fri Aug 25 09:44:14 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     279
Infernal-confirmed tRNAs:     279
Bases scanned by Infernal:  26983
% seq scanned by Infernal:  0.1 %
Script CPU time:          1.88 s
Infernal CPU time:            171.05 s
Scan speed:               157.7 bp/sec

Infernal analysis of tRNAs ended: Fri Aug 25 09:47:19 PDT 2017

Overall scan speed: 104772.6 bp/sec