tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Tue Aug 22 14:05:04 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         1241
Seqs w/at least 1 hit:  106
Bases read:             39450085 (x2 for both strands)
Bases in tRNAs:         17676
tRNAs predicted:        186
Av. tRNA length:        95
Script CPU time:        7.21 s
Scan CPU time:          312.43 s
Scan speed:             252.5 Kbp/sec

First pass search(es) ended: Tue Aug 22 14:12:53 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     186
Infernal-confirmed tRNAs:     181
Bases scanned by Infernal:  21396
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.56 s
Infernal CPU time:            178.75 s
Scan speed:               119.7 bp/sec

Infernal analysis of tRNAs ended: Tue Aug 22 14:17:11 PDT 2017

Overall scan speed: 157187.3 bp/sec