tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0rc2 (May 2017) scan results 
Started: Wed Aug 23 16:12:53 PDT 2017

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         2120
Seqs w/at least 1 hit:  59
Bases read:             46993781 (x2 for both strands)
Bases in tRNAs:         36005
tRNAs predicted:        467
Av. tRNA length:        77
Script CPU time:        8.16 s
Scan CPU time:          475.26 s
Scan speed:             197.8 Kbp/sec

First pass search(es) ended: Wed Aug 23 16:22:36 PDT 2017

Infernal Stats:
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Candidate tRNAs read:     467
Infernal-confirmed tRNAs:     460
Bases scanned by Infernal:  45340
% seq scanned by Infernal:  0.0 %
Script CPU time:          3.58 s
Infernal CPU time:            280.83 s
Scan speed:               161.4 bp/sec

Infernal analysis of tRNAs ended: Wed Aug 23 16:29:18 PDT 2017

Overall scan speed: 122406.7 bp/sec