tRNA Gene Summary

Overview
High confidence set 931
tRNAs decoding standard 20 AA 929
Selenocysteine tRNAs (TCA) 2
Notable atypical predictions  
Anticodon/isotype mismatch 13
Unexpected anticodons 3
Non-canonical anticodon loop length 1
Other tRNA-like predictions  
Primary filter (tRNAscan-SE pseudogenes) 9034
Secondary filter (low feature scores, possible rep. element) 408
Tertiary filter (excessive isotype copies, possible rep. element) 96

Note: tRNA predictions in mitochondria and nuclear mitochondrial sequences (NUMTs) are not included in the current version of the database.

Intron Summary (tRNAs with introns: 37)
Arg CCT
1
Leu CAA
3
Ile TAT
11
Tyr GTA
22
Four Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
AlaAGC
32
GGC
 
CGC
7
TGC
17
56
GlyACC
 
GCC
39
CCC
4
TCC
27
70
ProAGG
18
GGG
 
CGG
9
TGG
19
46
ThrAGT
25
GGT
 
CGT
9
TGT
21
55
ValAAC
19
GAC
 
CAC
16
TAC
11
46
Six Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
SerAGA
24
GGA
 
CGA
6
TGA
15
ACT
 
GCT
19
 
 
 
 
64
ArgACG
26
GCG
 
CCG
1
TCG
17
 
 
 
 
CCT
19
TCT
16
79
LeuAAG
20
GAG
 
CAG
8
TAG
9
 
 
 
 
CAA
3
TAA
7
47
Two Box tRNA Sets
IsotypetRNA Count by AnticodonTotal
PheAAA
 
GAA
 
 
 
 
 
0
AsnATT
 
GTT
39
 
 
 
 
39
Lys 
 
 
 
CTT
41
TTT
52
93
AspATC
 
GTC
68
 
 
 
 
68
Glu 
 
 
 
CTC
29
TTC
22
51
HisATG
 
GTG
27
 
 
 
 
27
Gln 
 
 
 
CTG
20
TTG
18
38
Two Box and Other tRNA Sets
IsotypetRNA Count by AnticodonTotal
IleAAT
1
GAT
2
CAT
 
TAT
11
14
iMet/Met 
 
 
 
CAT
46/14
 
 
60
TyrATA
 
GTA
22
 
 
 
 
22
Supres 
 
TCA
 
CTA
 
TTA
 
0
CysACA
 
GCA
35
 
 
 
 
35
Trp 
 
 
 
CCA
19
 
 
19
SelCys 
 
 
 
 
 
TCA
2
2