tRNAscan-SE Run Options & Statistics

	
tRNAscan-SE v.2.0.1 (March 2018) scan results 
Started: Sat Jan 19 02:21:22 PST 2019

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Search Mode:                       Eukaryotic
Searching with:                    Infernal First Pass->Infernal
Isotype-specific model scan:       Yes
Covariance model:                  TRNAinf-euk.cm
                                   TRNAinf-euk-SeC.cm
Infernal first pass cutoff score:  10


Reporting HMM/2' structure score breakdown
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First-pass Stats:
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Sequences read:         31896
Seqs w/at least 1 hit:  3864
Bases read:             990899639 (x2 for both strands)
Bases in tRNAs:         1180825
tRNAs predicted:        16139
Av. tRNA length:        73
Script CPU time:        135.32 s
Scan CPU time:          8378.50 s
Scan speed:             236.5 Kbp/sec

First pass search(es) ended: Sat Jan 19 05:21:31 PST 2019

Infernal Stats:
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Candidate tRNAs read:     16139
Infernal-confirmed tRNAs:     10486
Bases scanned by Infernal:  1503439
% seq scanned by Infernal:  0.1 %
Script CPU time:          112.60 s
Infernal CPU time:            8025.49 s
Scan speed:               187.3 bp/sec

Infernal analysis of tRNAs ended: Sat Jan 19 08:57:35 PST 2019

Overall scan speed: 119013.3 bp/sec